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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACTCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTgtaattcttgctttgtagtatacatccaagtgatggatttgtgatattttaagtctagttatgacctgatgcatttatttatgttgaattctatgaattg...

Basic information

species Glycine max
transcript GLYMA12G29450.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29450.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G179732_T03 (Zea mays), 5'ss of exon 4
----TATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACTCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTgtaattcttgctttgtagtatacatccaagtgatggatttgtgatattttaagtctagttatgacctgatgcatttatttatgttgaattctatgaattg
    || | ||||||||| ||| | | |||||||||||||||||||| || ||| |||||||||||||| || ||||| |||||  | || |||||     |||||||  |   |     | |  |  ||| | |  | |    |    | |   |    | |  |  | |  |  |   | || || |  ||| |  |     
ATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATGgtaagttg-attgtaacac---ccccaaaattcaagtcccactatttg----gaagcactagcaacaaaatacttccgtactatagaaaattgtgattcatttttagt----

upper sequence: GLYMA12G29450.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 12
----TATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACTCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTgtaattcttgctttgtagtatacatccaagtgatggatttgtgatattttaagtctagttatgacctgat-gcatttatttatgttgaattctatgaattg
    ||| |||| ||||||||||||| ||| || |||||||  |||||| | || || ||||| ||||| | |||||| |||||||||||| ||||      ||  ||||    |    |  |  |||   |||    | || | |     |      ||   ||  |  |||| |   | | ||                    
TCTATATCGAGCATACCAGAAACTTTATGCTTCAATGCATGTAAAAGGATTGGGACCCCACAAGACTCAATATAGAAGAGATGAAAACTACAgtaa-----gttcgaatttgcacac-atgtttgacacgaaagatgagaatct-tctcgctgcggaactgactaaaagttgattgtgataacttgcag----------------

upper sequence: GLYMA12G29450.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 12
----TATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCAC---ACAAAACTCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTgtaattcttgctttgtagtatacatccaagtgatggatttgtgatattttaagtctagtta--tgacctgatgcatttatttatgttgaattctatgaattg
    ||||||||||||||||| |||| ||| ||||||||||||| |||| | || || |   | ||||| ||||||||||||||||||||||| ||||  |||| || | ||  ||  ||| || ||       |  |||   || ||||    |  | |  |||||   | | || |   | | |||| ||||||             
ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGTGGGCCCCCCCCATAAAACACAGTTTAGAAGGGATGAAAACTATGgta--aaatgtttttatctttaatttatactaatttgaaatatgagaaatatgtgcatgtgcatgagtagtttcctaatctcacttaatcattt-tgttgatg-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213589623|gb|DB982656.1|DB982656
EST:     GCCACACAAAACTCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATT                         TTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATC
genomic: GCCACACAAAACTCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTgtaattcttg ... tatttggcagTTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATC