Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaagtactttctcatagatcagcacaatttattagtgaagtttatttggaatagctttatataaagccaacaatggatttatttcactacaca...

Basic information

species Glycine max
transcript GLYMA12G28730.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 12
GAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaagtactttctcatagatcagcacaatttattagtgaagtttatttggaatagctttatataaagccaacaa--tggatttatttcactacaca
|||||||| || ||||| || ||||||||  | |||||||||||||| || ||||| ||||  ||||||||||||||||| || || |||||||| || |||    ||   |  ||| || |   |  |  | ||| |    |  |   ||| | | ||       ||    |   |||   ||  ||   ||||  |    
GAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGgtacagttcccttatttttcttg--ttgggcctattaagagatctaacatatgtagtatgctccgttaagttgttgacatgttgcgttgtgttcatgattgg

upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 11
GAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaagtactttctcatagatcagcacaatttattagtgaagtttatttggaatagc-tttatataaagccaacaat--ggatttatttcactacaca-
||||||||||| || || || |||||||| ||||||||||| | ||| || ||||||||||  || || |||||||| || |||||||| |||||||| ||| ||||| |    | |    |  |||  |   || || |  ||| |   | |   | |  | ||||  | | |   |   |  | | ||   | | |  |   
GAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACTCGTCTTCCTAATGGCCGTCCTCTTCCTCCCCTCTTTAATTTCAAACCTCAAGgtaagtttga----tctgatctgtatccaccttatctacttttgaggaacaataatattgtcctttaggtgatgatgattttcagaaatttagtaattttatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193587866|gb|FK543489.1|FK543489
EST:     CCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGG                         AACTTTCTGGTGTACCTCCTGATGTCATCAATCGGCTTATTCCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|6719212|gb|AW306859.1|AW306859
EST:     CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTNTAAACCTCAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|151408852|gb|EV278660.1|EV278660
EST:     CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|9903227|gb|BE612195.1|BE612195
EST:     CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTCTAAACCTCAGG                         AACTTTCTGGTGTACCCTCTGATGTCATCAATCGGCTTATACCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|13479623|gb|BG508966.1|BG508966
EST:     CCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|7589778|gb|AW705545.1|AW705545
EST:     CCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTGAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG