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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttataatattaacacttaatctaacttggtaattctcctgaagttacttgtgtctttttgtttgactatttgattttatattttgcag

Basic information

species Glycine max
transcript GLYMA12G11820.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G11820.2 (Glycine max), 5'ss of exon 12
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 11
ATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtt------tttataatattaacacttaatctaacttggt-aattctcctgaagttacttgtgtctttttgtt-tgactatttgattttatattttgcag
||||| ||||||||||| ||||| || || ||||| |||||| |  | |||||||||||||| ||||||      |||     || |    || || ||  |  || ||       |||||   |      || ||||| |   | | ||  | | |      |||
ATATTTTACTTCATTGGGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGgttccctcctttgctgaatcatttattcatgtagataagttaaaaaggaagaagtggttaacaagttgttgttgttgttgtgtgtgtgtgtggga-acag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231650|gb|BE800538.1|BE800538
EST:     GATTTGGCNNNNNNNGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGT
genomic: GATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttataa ... tattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGT
EST: gi|22929729|gb|BU546868.1|BU546868
EST:     GATTTGGCNNNNNNNGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGT
genomic: GATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttataa ... tattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGT