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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGACAGTCCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAgtaagattcacacaccatatcttaatcacttttaactttatatatatatatatatatatatatatatatattagtttttcctctttttttaataatttag...

Basic information

species Glycine max
transcript GLYMA12G09430.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09430.3 (Glycine max), 5'ss of exon 12
lower sequence: AT1G08320.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCTGACAGTCCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAgtaagattcacacaccatatcttaatcacttttaactttatatatatatatatatatatatatatatatattagtttttcctctttttttaataatttag
|  |||| ||||| ||||| ||||||||||| || || || |||||||| ||||| || || ||||| ||||| || ||||||   ||| | ||||||||||||||         || || || ||   | |  || ||  ||| |  ||||   ||    | ||||  ||| | | |      || |  |      |||
TCTTGACCGTCCGACAAGCTGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGACGGCTCAGAGCTCTTAGCTCCCTTTGGTTGTCACGCCCACGAGAgtaaga---------cacatttttatgcatatatacatttcatagacgtataataatgctaaaatatgaatttgatatcgggaattatcaatgtgaatag

upper sequence: GLYMA12G09430.3 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 11
TGCTGACAGTCCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAgtaagattcacacaccata--------tcttaatcacttttaactttatatatatatatatatat-atatatatata-tattagtttttcctctttttttaataatttag-------------------------------------------
| |||||||| || ||||||||||| |||||| | |||||||| ||||| ||||||||  |  ||||||| || || |||||||||||| | || |||||||||||  || | | || |        | ||    |||| ||   |||  |     |  |||||| | |  | |  | ||| ||| | |  |  ||  |||   ||||                                             
TACTGACAGTTCGACAAGCAGCACGTTGTTTTTTGGTGATTGGCGAGTACTATGGCCGATTACGAGCCCTCAGCTCCCTTTGGGCATCACGGCCCCGAGAgtaagacccaaataacacaatcattagtgttggatacttgtatgattagcttaggctgcatatatcaaacctttccactataagtatgtggtacttaattatgcatttgagctcattgatctacatcttgcttggcctttacatgtgcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320975|gb|GR827424.1|GR827424
EST:     TATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGA                         GACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAAT
genomic: TATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAgtaagattca ... ggttcaacagGACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAAT