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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTATGCAGCAGgtagattgttctcttggcttgataaatttataagcaaactattttgaattactgttggttccttaatccatccttgtgatattgaataatcaagtttgaa...

Basic information

species Glycine max
transcript GLYMA12G07590.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 5'ss of exon 11
ATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTATGCAGCAGgtagattgttctcttggcttgataaatttataa--gcaaactattttgaattactgttggttccttaatccatccttgtgatattgaataatcaagtttgaa--
|| ||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||| | ||||| ||  |||| | | | || ||||||  |     |||| |  ||| |  ||| |      |  | |  ||   ||  | ||   | ||||    ||  ||   ||  |   || ||    |  ||  
ATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTGTTCAACAGgtatttccaattctttgaatgaaacttttttgtttataggccagatt---tttttctttaattcttatattattttta-aattgtccttattcggactcaaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729846|gb|BU763027.1|BU763027
EST:     GCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTATGCAGCAG                         ATCCTAAACTCAATCCCAAAGGAGTCTGATGGTGAGAAATTTGAAGACGCC
genomic: GCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTATGCAGCAGgtagattgtt ... tgttatctagATCCTAAACTCAATCCCAAAGGAGTCTGATGGTGAGAAATTTGAAGACGCC