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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatag

Basic information

species Glycine max
transcript GLYMA11G37770.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 7
AATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtga-gtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatag
|||||| |||  ||||| ||||||||||| ||||||||||||| |||||| |||||   | ||  | ||    |   || |||  ||| || |  | ||    | ||       ||||   ||     ||     |      | |||  |                                                    
AATGACCTGGCACATGGTTGGGGTCTTGACTTTGCTCTTAGAAGATGTGTAGAGgtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttag---catgcatgatcatattggaacttcctcgtctttgaaacag----------------------------------------------------

upper sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 3
AATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtga-gtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatag
|||||| |||| ||||| ||||||||| | ||||||||||||| |||||| |||||   | ||  | ||    |   || |||  ||| || |  | ||    | ||       ||||   ||     ||     |      | |||  |                                                    
AATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAGgtactgacctatgtctgcctacttctaattctcttatattatttgtttgttag---catgcatgatcatattggaacttgctcgtctttgaaacag----------------------------------------------------

upper sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 12
AATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtga-gtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatag
|||||| |||| ||||| ||||||||||| |||||||| |||| |||||| |||||   | ||  | ||    |   || |||  ||| || |  | ||    | ||       ||||   ||     ||     |      | |||  |                                                    
AATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAGgtactgacctatgtctgcctacttctaatactctcatattatttgtttgttag---catgcatgatcatattggaacttcctcgtctttgaaacag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024808|gb|CX711549.1|CX711549
EST:     ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG                         CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
genomic: ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccat ... tctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
EST: gi|51337681|gb|CO981547.1|CO981547
EST:     ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG                         CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
genomic: ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccat ... tctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
EST: gi|57574426|gb|CX547401.1|CX547401
EST:     ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG                         CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
genomic: ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccat ... tctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
EST: gi|16996411|gb|BM085783.1|BM085783
EST:     ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG                         CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
genomic: ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccat ... tctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
EST: gi|192315451|gb|FK009225.1|FK009225
EST:     GCTTGGTCCATGGGTGGGGTCTTGATTTTGTTCTTAGAAAATGTGTTGAG                         CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
genomic: ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccat ... tctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
EST: gi|57574192|gb|CX547167.1|CX547167
EST:     ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG                         CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA
genomic: ACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAGgtgagtccat ... tctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAA