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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaactttcttcaatatttccacttatttacctttttgttacttttgttaatttttgttgtgaacttgtattataacag

Basic information

species Glycine max
transcript GLYMA11G37250.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 11
CAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaactttcttcaatatttccacttatttacctttttgttacttttgttaatttttgttgtgaact----tgtatta---taacag
   ||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||  |||||||||||||||      ||||||     |    || |  |    |       |   ||| || |||    | || |||    ||| ||    | ||||
GGAGGCTGGAGCAATGGGATTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGACAATTGTTTGGCAGTTGCAGAAGAATATGATATCCAGgtc---ttttcttttccctgatgacatcctcttttaagaaacaggattgatagtttcccatatgtactcaattgttttgatttgacag

upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 11
CAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaactttcttcaatatttccacttatttacctttttgttacttttgttaatttttgttgtgaacttgtattataacag
 ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||| | ||||||||| |||||||| |||||||| |||||||    | ||| ||  || | |  | |||   || ||| ||||||||    |  |   |  | |       |  | | ||||
TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgtt--attttattttatttatttatttaa--acttttatgttacttgcagttgtagctagttttcttactttctgttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405862|gb|EV275677.1|EV275677
EST:     CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAG                         GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
genomic: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
EST: gi|16278014|gb|BI942681.1|BI942681
EST:     CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAG                         GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
genomic: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
EST: gi|151402941|gb|EV272754.1|EV272754
EST:     CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAG                         GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
genomic: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
EST: gi|208294142|gb|GE092631.1|GE092631
EST:     GACCAATATGATTATCCAG                         GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATAC
genomic: GACCAATATGA-TATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATAC
EST: gi|151394452|gb|EV264323.1|EV264323
EST:     CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAG                         GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
genomic: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA