Sequence
atgc intronic sequence ATGC exonic sequenceTACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtgctctcaggtttatttgcacaatggaatttgcataatcatgccttaagtgtctggtggaaggaattaaacagactagcataaagattaatg...
Basic information
species | Glycine max |
transcript | GLYMA11G18930.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G27460.1 (Arabidopsis thaliana), 5'ss of exon 12
TACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtgctctcaggtttatttgcacaa--tggaatttgcataatca------tgccttaagtgtctg---------gtggaaggaattaaacagactagcataaagattaatg------------------------------------------------------------------------------
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TGCCTCGTTTAGTCTTTGCCTTACTCCGTAATCCCCTTCTCCGGTTTCATGAAGAAGGTGTTCATCCTGATTACAGAATCTACTTGCAATGCCTTTTCAGgtaaccatcccaatgaactactaataaccaacctagagtcagcgtgaacaatattgtatatttagtgtattttttcgatcgtggatttatttggaaaaaataccttggtatctcatgtaaacagaccacaagcaaggctttagtctctaaatttcgtgtttgtgttcttctgttttgttttccttaaaactgcag
upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 12
TACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtgctctcaggtttatttgcacaa-tggaatttgcataatcatgccttaagtgtctggtggaaggaattaaacagactagcataaagattaatg--
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TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttagg---taattaaaaaaatgttatgcattgaatcatttgccaaagtt
upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S29_149V6.1 (Physcomitrella patens), 5'ss of exon 12
TACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtgctctcaggtttatttgcacaatggaatttgcataatcatgccttaagtgtctggtggaaggaattaaacagacta-gcataaagattaatg---
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TGCCTCGGCATGTCTTTGCACTTCTTCGGAGCCAATTGTTGAGAACTCACGAGGAAGGAGTACATCCTGACCACAGAATATATCTTCAATGCCTTTTCAGgtatataattttttgtggaatacccacttggcttgttttgagttgacttac----agactcccatccactgttgtgaacgaactttgctgtacggtagacgtggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16105025|gb|BI892765.1|BI892765EST: GAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAG CATGTTGGAACCCAGTTCCCTTCATCGTGCTGTGTATCCCGTGTTGACATC
genomic: GAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtg ... tgttttgtagCATGTTGGAACCCAGTTCCCTTCATCGTGCTGTGTATCCCGTGTTGACATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtgctctcaggtttatttgcacaatggaatttgcataatcatgccttaagtgtctggtggaaggaattaaacagactagcataaagattaatg
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG