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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGATAATGATAACTTGCCGTTACATGAGATGCTAGATGACAAACTGAGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgccactttctacataggcttctttggcaaaataatctgaaaactaattggaacttgatagctgaaacatgaaaagttaatttattaaattat...

Basic information

species Glycine max
transcript GLYMA11G16220.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G16220.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0220g00070.t01 (Vitis vinifera), 5'ss of exon 11
ATGAAGATAATGATAACTTGCCGTTACATGAGATGCTAGATGACAAACTGAGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgccactttctacataggcttctttggcaaaataatctgaaaactaattggaacttgatagctgaaacatgaaaagttaatttattaaattat--
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ATGAGGACAACGACACTTCCCCACTCCATGAGATGCTTGATGACAAACTGAGAGTTTTTTACTTCAAGGGATACCTTGCCTCAGTTGCGCAGGCAATCAAgtgagtt-gcca-taactttgtcgttttttttttcatatacatgcatgtttcagccacccatatattattaaccaatttaattttgacttatctattcatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323235|gb|GR840040.1|GR840040
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|207811707|gb|GD785952.1|GD785952
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGG
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGG
EST: gi|193684458|gb|FK623554.1|FK623554
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|208058216|gb|GD860235.1|GD860235
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGG
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGG
EST: gi|16343782|gb|BI969377.1|BI969377
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|207713670|gb|GD695345.1|GD695345
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGA
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGA
EST: gi|208143435|gb|GD942453.1|GD942453
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|13478588|gb|BG508004.1|BG508004
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|193493539|gb|FK460989.1|FK460989
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|7685569|gb|AW756217.1|AW756217
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|14990778|gb|BI316451.1|BI316451
EST:     AGAGTTCGCTATTTCAAAGGATAACTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|58019646|gb|CX706388.1|CX706388
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|208186897|gb|GD987139.1|GD987139
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGAT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGAT
EST: gi|7591313|gb|AW707049.1|AW707049
EST:     AGAGTTCGCTATNTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGNGATACTNTGCGTGGTCATTACTAGACAACTN
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
EST: gi|207746658|gb|GD719209.1|GD719209
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATG
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATG
EST: gi|58022640|gb|CX709381.1|CX709381
EST:     AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAA                         GGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT
genomic: AGAGTTCGCTATTTCAAAGGATATCTTGCGTCAGTTGCTCAGGCTATAAAgtgagtttgc ... gaatgcacagGGATGGAGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGACAACTT