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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacatttttgctttttttgttttttggcttaaattagcctctgatgtcaagtaataatgttaatcaatgatgtaacagcaacaatgacagtcatatgta...

Basic information

species Glycine max
transcript GLYMA11G11960.3
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214005069|gb|DB985679.1|DB985679
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|209726038|gb|BW672761.1|BW672761
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|22930235|gb|BU547374.1|BU547374
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|9899890|gb|BE608858.1|BE608858
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|58014892|gb|CX701634.1|CX701634
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|120491021|gb|EH219188.1|EH219188
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|9899883|gb|BE608851.1|BE608851
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|17153400|gb|BM143333.1|BM143333
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCATACTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|209714967|gb|BW650813.1|BW650813
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
EST: gi|209722770|gb|BW682868.1|BW682868
EST:     GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATG                         ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacattttt ... attcctacagATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATCTTACATTGTGAAGGATGAAAGTGGATATGGCTCAACCATGgtacatttttgctttttttgttttttggcttaaattagcctctgatgtcaagtaataatgttaatcaatgatgtaacagcaacaatgacagtcatatgta

- - - - - - - -  AGGATG
- - - - - - - - - - - -  AGTGGA