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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag

Basic information

species Glycine max
transcript GLYMA11G09480.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 10
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgta---ttggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
| ||||||| || ||||||||||| ||||||||||| || || || ||||||||| | || || ||||||||||| || || ||||||||||| ||||||||    ||   || |  |     |    | || | |||  | |    |  ||  |    |  |||    ||                                                      
ACTGAGAGATATCATGCAATTTGGGAGCAGCAATACCGCTGTTTTCTTTAAAATGAGAGTCGCTGGTGTTCTTCATATCTTTCAGTTTGAAACTAAGCAGgttagttttaaatctctaccaggaaataattcatactatgtgtaggctgtgaaataaccatctgatatttag-----------------------------------------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 10
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatc-ttcattact-ttgaagttattttattttattggtattttatcattctttgaag
| | |||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| ||||||||||| || || || ||||||||||||||||||||   | | |  | | || |           ||||  ||||    ||    |  | ||  | ||||| | |||  || ||  | | |   |   || || |                    
ACTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTCTTCTTTAAAATGCGGGTTGCTGGTGTTCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagcttcgaggcaat-----------agtttataat----acagccgatcctg--ttatatcatccatagctgttagaataacgatgactttttag--------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 10
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactt--tgaagttattttattttattggtattttatcattctttgaag
||| |||||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||| ||||| ||||| || || || ||||||||||||||||||||   | |||  | | || |           ||||| ||||     | | ||  | ||  | ||||| ||  ||  |  |  | | |   | |||| | |                     
ATTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTTTTCTTTAAAATGCGAGTTGCTGGTGTCCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagtttcgaggcaat-----------agttcataat----gcatctgatcctg--ttatatcatctataactgatagaataaccatgttttttag---------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
| |  | ||||| ||||||||||| ||||| || ||||| || ||||| |||||| | || || ||||||||||||||||| ||||| || ||||| ||||| |   |||               ||| ||  | | || | || |     |   |   |  || ||    |  | | ||||      || ||| ||  | |                    
ACTACGTGACATCATGCAATTTGGCAGCAGTAACACTGCTGTCTTTTTCAAAATGAGAGTCGCTGGTGTTCTTCACATATTTCAGTTCGAGACAAAACAGgtttaaacat--------------cactatttgtggatcattatatta---tgaagcaattccttatgagatattcaatttgggtaacttgtatgtttgtag--------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 11
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggact------tgactcatatcttcattactt-----tgaagttattttattttattggtattttat--cattctttgaag
| | ||||| |||||||||||||| |||||||||||||| ||||||||||| ||| | ||||||||||| || |||||||||||||||||||| || |||||  |   || ||  | |   || ||    |     |      ||| ||  ||| | ||      |   | || | ||| ||  ||     | ||   ||| |  |||  | |  || |||  |||| | || ||
ACTAAGAGATATAATGCAATTTGGTAGCAGCAATACTGCTGTATTTTTTAAGATGAGAGTTGCAGGTGTCCTCCACATATTCCAGTTTGAAACTAAACAGgttctta-atcttttgagtttctatatgtatatatataacatttttagagttttagtctcttttttcttttatgtattccttgtttgcctatcaaaaaattattatttgatagagttctattccattttatgcag

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S199_47V6.1 (Physcomitrella patens), 5'ss of exon 13
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcaggg-acactgtactct----tcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
  || | || || |||||||| || || || |||||||| || |||||||| ||||| ||||| || |||||||| || |||||||| |||||||||||||||||   |  |  || | |    ||||  |    ||| || |  |    | |   | ||      | | ||| |||  | | ||   |  | |   |||   ||   |                  
GCTGCGTGATATCATGCAATTCGGCAGTAGTAATACTGCCGTTTTTTTTAAGATGCGTGTTGCTGGAGTTCTTCATATTTTCCAGTTCGAAACAAAGCAGgtatttataaatcaagtgtaagtcgtacggtcatatccaagctgctgcggtggttttatgagtc--atttataacttggtaatttatgatgtgtgggattggcttcaaacag---------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 12
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
 ||| |||| || ||||| ||||| || || || ||||| ||||||||||||||||| || || || || || || || || ||||| ||||||||||||||||    ||  | |  | |  ||  |     | || |  |    |     |||  | || | | ||   | ||  | ||| | || |  |   |||                         
GTTGCGAGATATCATGCAGTTTGGCAGTAGTAACACTGCTGTATTTTTTAAAATGCGAGTCGCTGGAGTCCTACATATTTTTCAGTTCGAAACAAAGCAGgtatc--tattcttaatgtctatggtcatactcaagcttctgcggtgtggattta-attttagttatgagt-caacaatttaatgtaaaatccctttgaaacag------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgt-attggcatgttcagggac-actgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
| || | ||||| ||||||||||| |||||||| || || || ||||| |||||||| || || ||||| || || || || |||||||| || |||||||| |||  | |    ||      || |   ||| | | | | ||  ||     ||||||   || | || | |   ||   |||     |                                  
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatccctatatta---ttttgga---gatttatttttggtttgtcttgtgagcag---------------------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 11
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
  |||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || ||| | ||||| || ||||||||||| || ||||| |     ||            || ||  ||  | ||  |      |                                                                          
GCTGAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgtctttgtggctttccgtgtagttcttctctaaatttctgtcgcag--------------------------------------------------------------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 11
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag
  | |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || ||| | ||||| || ||||||||||| || ||||| ||    ||            || ||  ||  | ||  |      |                                                                          
GCTTAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgtttttgtggctttccgtgtagttcttctctaaatttctgtcgcag--------------------------------------------------------------------------