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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttcattttcttcaacaatgaaaagaatgcgtctttctttgaaatttttcaacacaactgctattgtttaaactttcaacttgcagatatgtat...

Basic information

species Glycine max
transcript GLYMA11G09370.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820048|gb|BE555561.1|BE555561
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|193710860|gb|FK647347.1|FK647347
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|207710244|gb|GD689710.1|GD689710
EST:     CACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: CACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|193547493|gb|FK501430.1|FK501430
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|193541489|gb|FK499185.1|FK499185
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|208154105|gb|GD954402.1|GD954402
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|193706504|gb|FK642273.1|FK642273
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|208190742|gb|GD991390.1|GD991390
EST:     GGGAGCCTGAACATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAA
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAA
EST: gi|193635471|gb|FK584824.1|FK584824
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGG
EST: gi|208165847|gb|GD964185.1|GD964185
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|207719655|gb|GD702154.1|GD702154
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGACAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|193371198|gb|FK336851.1|FK336851
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTC-AAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|22523112|gb|BU081923.1|BU081923
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|14259145|gb|BG882053.1|BG882053
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|208073736|gb|GD869053.1|GD869053
EST:     ACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: ACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|193389319|gb|FK353952.1|FK353952
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|31464043|gb|CD406071.1|CD406071
EST:     GGGAGCCTGAGCATCCCTACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         TTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|207827796|gb|GD800389.1|GD800389
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|209718163|gb|BW657809.1|BW657809
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: gi|192294436|gb|FG987365.1|FG987365
EST:     GGGAGCCTGAGCATCCCAACAATCCTTGGAGTGTGACACCTTTCAAAAAG                         GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttcattttcttcaacaatgaaaagaatgcgtctttctttgaaatttttcaacacaactgctattgtttaaactttcaacttgcagatatgtat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagaa