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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCATTCCAAATAACATATATCTTGTGGATATGGgtaatgaagtttataacactatctttcttggctataggccaatgtgtttttattgtctatattcctgaataataaaagaacaatttcttatttgcag

Basic information

species Glycine max
transcript GLYMA11G09270.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09270.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 12
AACGCATTCCAAATAACATATATCTTGTGGATATGGgtaatgaa--gtttataacactatct-ttcttggctataggccaatgtgtttttattgtctatatt---cctgaataa----taaaagaacaatttcttatttgcag-----
|| || ||||| ||||||||| || |||||||||||||||||||  |||   |  | | ||  || ||  || |  |    | | | || |    |||| ||     ||   ||    |||||     | || || ||  | |     
AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaattgttcccactattttcaattattaactttttgttt-tttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193421444|gb|FK389617.1|FK389617
EST:     AACGCATTCCAAATAACATATATCTTGTGGATATGG                         TATTCTTTTGGGGTGAGAAACTGTTTCCGTACTGACTACAAGCTTGCAGCA
genomic: AACGCATTCCAAATAACATATATCTTGTGGATATGGgtaatgaagt ... ttatttgcagTATTCTTTTGGGGTGAGAAACTGTTTCCGTACTGACTACAAGCTTGCAGCA