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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAGgtcattttagtaccatgactagtctcatttgtctatttttacaatgcctatttgacttctcccattaatgtcacttatgttcttataaatgtaagacaaaataatacttatttttgtgatccattctccttgcattatacttatttttttccctctcccctttag

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 13
GTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAGgtcattttagtaccatgactagtctcatttgtctatttttacaatgcctatttgacttctcccattaatgtcacttatgttcttataaatgtaagacaaaataatacttatttttgtgatccattctccttgcattatacttatttttttccctctcccctttag
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GTTGAGGCATTGTTTGAATTAATAAAAGGGCTTATCAAGGATTTGGATGGGGATCTTCATGATGAGgttgttgcaagttatcttttagccatctttatttactt----ggtgataataaagacacttctttaaatgcttattgcttttctcccaat-----acatgtttattcct--------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193347700|gb|FK313488.1|FK313488
EST:     AACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAG                         CTGGATGAAGATGATTTCAAAGAGGAGCAGAACTCTGTTTCCCGTCTAATC
genomic: AACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAGgtcattttag ... tcccctttagCTGGATGAAGATGATTTCAAAGAGGAGCAGAACTCTGTTTCCCGTCTAATC