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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatctctttcaaatcatatggttgcccttatattggatgatcttgttttggagtgatgaaagatttttacttgaaatatatgaaacaatttgttagaagaaaattgtgactggcatttgatgtgaatttcttataatgattaatattagtttatatcatataatagtttctaattgatttttttag

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687754|gb|BF595430.1|BF595430
EST:     ACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|51343377|gb|CO984110.1|CO984110
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|18039193|gb|BM307487.1|BM307487
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGC
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGG-ATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGC
EST: gi|254331134|gb|GR843253.1|GR843253
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     CAGCAAACAGAGGGTGGA-TACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: CAGCAAACAGAGGGT-TATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|18720306|gb|BM523249.1|BM523249
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|254331133|gb|GR843252.1|GR843252
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|120533498|gb|EH261631.1|EH261631
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|11689775|gb|BF597451.1|BF597451
EST:     ACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA