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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGgtaatccatcctgacttactaggcttttgttttgttttaaacattgatacatagacaccttaacatttacttagaactcagtatttgtttctaatttactctctgaag

Basic information

species Glycine max
transcript GLYMA11G04600.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04600.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 12
GTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGgtaatccatcctgacttactaggcttttgttttgttttaaacattgatacatagacaccttaacatttacttagaactcagtatttgtttctaatttactctctgaag
||||||||||| || |||||||||||||| || || |||||||||||| |  || ||||  || |  |      |     |   ||  ||  |    |  || ||| ||  ||||    ||||   ||                         
GTTCCCATGTTTACAGCATCTGGTTTACGCGTTCGGTTTCTTAAGgta-tgtatgctgaactagtcaga----atgcccatgccaatgtt--tttgaaagcagcttcacccttacc---aactttctacag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335335|gb|CO979201.1|CO979201
EST:     GTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAG                         GTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACA
genomic: GTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGgtaatccatc ... ctctctgaagGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACA