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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCCGCGGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcttcttccatattttacatgttggttgttttcttataaatttcattattaattgcttatctagatttactataatattgcattgtcccaggaaag...

Basic information

species Glycine max
transcript GLYMA11G03800.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G16760.2 (Arabidopsis thaliana), 5'ss of exon 12
GTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCCGCGGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcttcttccatat--tttacatgttggttgttttcttataaatttcattattaattgcttatctagatttactataatattgcattgtcccaggaaag
| || ||||| ||    |||||||| ||||| |||||  ||||||||||||| || |||||||||||||||| | |||||||   |   |||||| ||           | || | | ||  | | |||  |   ||  || ||  | | || ||    ||||   |  |  
GATTCCAAGAGCTCTTGGCTGATTTGGTTGAGGCCGCTATTGCTCATTGCCAATTGATTGTTGTTTCCAAgtaatcttcttcttcaccgtttacacgtatcaaacaagttaatgattctccctctcaatgtcagttcctgaatt-ttgtgatctt----tgtcttggttag-

upper sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 10
------------------------------GTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCCGCGGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcttcttccatattttacatgttggttgttttcttataaatttcattattaattgcttatctagatttactataatattgcattgtcccaggaaag
                              | ||   ||||||    |||||| | ||||| || ||   ||||||||||||||||||||||||||| |||| ||          | |   | | ||   |    | ||| ||| |  || |  |    |  |||   | ||||  | | | | ||  |           
ATCTAAGCAAGTTTGAGAATCAAGAACAAGGATTCTCAGAACTCTTGGCTGATCTTGTTGAGGCTGCTACTGCTCATTGCCAGTTAATTGTTGTTTCTAAgtaagta--------aataagcttcttcactaaaattttacaaacta-atcaacagactcaaatcataacttac-gtgaaaattcacag-----------

upper sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 10
GTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCCGCGGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcttcttccatattttacatgttggttgttttcttataaatttcattattaattgcttatctagatttactataatattgcattgtcccaggaaag-
| |||   |||||| | ||||||||||| || || || ||||| |||||||| || |||||||||||||||| ||||||||      |  ||| |  |  |   | |||   |||  | | |||       |  ||  | |  || |  |  || ||  |||   |  |  
GCTTTGCTGAACTATCAGCTGATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttcttatcctctccacaggaggaatccatgcttcataatgccttgattctacctctccctttagtgcctctcttcatgaat-atccagagcgacc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393106|gb|EV262981.1|EV262981
EST:     GATTTAGTTGATGCCGCGGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATACCTGGAAAGGGAGTGAAAAAGCA
genomic: GATTTAGTTGATGCCGCGGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcttct ... tgttttttagATTTATTGAGAAGTTGCAGCAAGATATACCTGGAAAGGGAGTGAAAAAGCA