1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAGCAAACTTGTTCCTGACTTAAATGATCTTACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttcaaatattttaaggtttcattcacattcctcagttacaagcaattcagtcatctaagttttttttgtcatgttcctctgcaag
species | Glycine max |
transcript | GLYMA10G44630.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCTEST: gi|58015739|gb|CX702481.1|CX702481
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
EST: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCTEST: gi|18690854|gb|BM519710.1|BM519710
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
EST: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCTEST: gi|58018947|gb|CX705689.1|CX705689
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
EST: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAAACTTGTTCCTGACTTAAATGATCTTACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttcaaatattttaaggtttcattcacattcctcagttacaagcaattcagtcatctaagttttttttgtcatgttcctctgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT