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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaatctcgtttgtttgatatcaaggtgctttaaagtgataaatattttctgtttcttaattaaagcaagtggttcacacactaaaggtgcatcattggtcacttttgcag

Basic information

species Glycine max
transcript GLYMA10G42940.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaatctcgtttgtttgatatcaaggtgc---tttaaagtgataaatattttctgtttcttaattaaagcaagtggttcacacactaaaggtgcatcattggtcacttttgcag
|| || ||||| ||||||||||| || || |||||||| |||||||||||||| | | | |  | ||| || | |||   |     || || || |    ||    |   ||   || |   |||                                           
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttt--tctgtatgttttcagcatttatgttgaaggttagttgtaagaaccacttaacaactcctgcag------------------------------------------

upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 12
ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaatctcgtttgtttgatatcaaggtgctttaaagtgataaatattttctgtttcttaattaaagcaagtggttcacacactaaaggtgcatcattggtcacttttgcag
|||||||||||||||||||||||||| ||||| ||||| || ||||||||||       || | || ||  |||       ||  |||  |     | ||||| |   |   | ||    |||| || | |||      | ||  |   ||||| | |  |||||
ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaa------ccttgcttattgcataa------gccctaagct--cggagattttttaaatggaagttctgacaaggggcttacat----catgtaaaatgttggtaattcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452473|gb|BM953883.1|BM953883
EST:     ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaa ... acttttgcagAGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
EST: gi|15813509|gb|BI785784.1|BI785784
EST:     ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaa ... acttttgcagAGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
EST: gi|16283344|gb|BI945501.1|BI945501
EST:     ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAAGGGATCATTCTGATGTGTCCAA
genomic: ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaa ... acttttgcagAGTGCTATTGGTGAGGGAATGACTAGAAA-GGATCATTCTGATGTGTCCAA
EST: gi|16283207|gb|BI945427.1|BI945427
EST:     ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaa ... acttttgcagAGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
EST: gi|16279679|gb|BI943560.1|BI943560
EST:     ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaa ... acttttgcagAGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAAC
EST: gi|16278507|gb|BI942940.1|BI942940
EST:     ATATACCCACCAATCAATGTTCTGCCGTCACTATCTCGGTGGATGAAG                         AGTGCTATTGGTGA
genomic: ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaa ... acttttgcagAGTGCTATTGGTGA