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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTGgtatgtttcttgctcgttaagcatatggcataaatgtccaagtacatatttgaagaaagtcgttactttgaatcatatgctgtag

Basic information

species Glycine max
transcript GLYMA10G41940.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 6
GTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTGgtatgtttcttgctcgttaagcatatggcataa----atgtccaagtacatatttgaagaaagtcg-ttact-ttgaatcatatgctgtag-------------------------------------------------------------------------------------------
|| |||||||||||||||||||| || ||  |||| |||||||  || || || ||||||||||||||||  |||   |   |  || |    | |     | || || || || | ||  |    | |  || | ||  | |||||      |                                                                                           
GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtag

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 6
GTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTGgtatgtttcttgctcgttaagcatatggcataa----atgtccaagtacatatttgaagaaagtcg-ttact-ttgaatcatatgctgtag------------------------------------------------------------------------------------------
|| |||||||||||||||||||| || ||  |||| |||||||  || || || ||||||||||||||||  |||   ||  |  || |    | |     | |  || || || | ||  |    | |  || | ||| |||| ||      |                                                                                          
GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019147|gb|CX705889.1|CX705889
EST:     TGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTG                         ATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGT
genomic: TGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTGgtatgtttct ... tatgctgtagATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGT
EST: gi|58018861|gb|CX705603.1|CX705603
EST:     TGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTG                         ATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGT
genomic: TGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTGgtatgtttct ... tatgctgtagATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGT