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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtaggtctcttaattaattcctgtgtgtcatattttgaggttagtataaatcattgtataattcactgattgatggttgtgtttccacag

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 12
AAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtaggtctcttaatt---aattcctgtgtgtcatattttgaggttagt-ataaatcattgtataattcactgattgatggttg-tgtttccacag----------------------------------------------------
||| |||||||||||||| || || | ||||||||| || ||||| ||||||||| | ||||| || |||||||| ||||||||||| |||  ||  | || |    ||    | |     | ||||  || ||  | || |   ||||  ||| |  || ||  |   ||| ||| |                                                          
AAAACCAGTGAAAAAGGTGGGAGCGTTTTGTTGGCTTTCCCTTGCTATTTGCATTATTGAACTACTCATTTGCATCAAGTTTGGACATGgtttgttccctattctaaaagcattataatgaacatttcaagtttgcttattacctattggttaactggctaatcaagtattgatgtctagttgatgtgtaaaacttgcctgctgacatttgtgaactgttattttactcttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237104|gb|BE805992.1|BE805992
EST:     TCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACG                         GCTTGTATCCAAAACCAATGCCTATATGGCTGGTAATATTCTGGTCGGGTG
genomic: TCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtaggtctct ... gtttccacagGCTTGTATCCAAAACCAATGCCTATATGGCTGGTAATATTCTGGTCGGGTG