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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag

Basic information

species Glycine max
transcript GLYMA10G39080.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os12g41230.2 (Oryza sativa), 5'ss of exon 6
---TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag
    || || |||||    |||||  ||||||||||||||||||||||||||||||||||||||||||| || || |   ||||  |||  || | |||| |    |  |         ||   |||| || ||  ||   |  ||     | | |  |    |||||| |  ||  | | |  | |   
CATGGAAACAGTTCTATCGACTCGAGAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTAATTCGCA---CTGAGCCTG-GTCAGGAATTAGCTgtaagagccactctctttgttttacttcctttctcctttgttacgtgctactgct----catataatccttgctatattatag---

upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag
 || || |||||    || || || |||||||| ||||| |||||| | |||||||||||||||||||| |  |  |||||  |||  | || | || |||  |  | |  | ||  | | | || ||    | || ||     | || | | | | || |  |||| | |   ||      || ||
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTG-GTATGGACTTAGGGgtaagagac-actaacttattgtacttgagtatttcct-----ttaatcttgtctgttgctaatatcattgtcttcaatactgtag

upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G701689_T01 (Zea mays), 5'ss of exon 6
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag
 || ||||||||    || || || |||||||| ||||| |||||| | ||||||||||||||||| || |  |  |||||  |||  |||| || |  ||  |  | |  | ||  | | | ||| |    |||| |      | || | | | | || |  |||| |     ||     ||| ||
GGAAACTGTTCTATCTACGCGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTAATTCATACATCTGAGCCTG-GTCTGGAACTAAGGgtaagagac-actaacttattgtatctgagtacttccc-----ttaatcttgtctgttgctaatatcatcatcttcaatattgtag

upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G22760.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaatt-aatatttaactttattt-tctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag
 ||   ||| ||    |||||| | |||||||| || || |||||||||||||||||||||||||||||  |||  || |||||  |   |||| |||| || ||     | |||||||   |||| || ||   ||   ||  ||||   ||||       | ||||  | |     ||   |  |||
AGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCGCAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCATCATTGAAGTTGGTgtaagtgttctcaatatttccttttacttatcatcctcaatacatttatctcattgaaaaggc-tataaaattctgcattggttcacag

upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaac---tttattttctcactttctaattttaaaccatttttttt-tcatatattaatt-----------attttttccttgcag--
 || |||||| |    || ||| | |||||||| || || |||||||||||||||||||||||||||||  ||| | | |||||  |    |||  | | || || |  |   ||||  |    ||||||  | | |   |      |    || | | | | || |  ||||||            ||  ||  ||||||   
AGAAACTGTTTTGGCTACCCGCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAATGCAGATTCCATCATGGAAGCTAGTgtaag-agctctctattccatctttttattccccccccccccccccctctctcactctctctgtcctccattaatctaagggatgacatcgttatcttgcacag

upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G14770.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag----
 ||   ||| ||    |||||| | |||||||| ||||| |||||||||||||||||||||||||||||  | |  ||||| || ||    ||||  |||||    |   |  | ||   | |  |||  |  || |  |   |  | | || ||  ||  |  ||| ||| || || |  |  ||     
AGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCGGAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGACTCAGTTCAAGAAACCGGGgt----aggattcttttccccgtcctttgattcctctgcatcatccatctatcttgcttgaagttat-aataatattgtaatgacacacag

upper sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0020g03880.t01 (Vitis vinifera), 5'ss of exon 7
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattat--tttttccttgcag
 || |||||||||  ||||||| ||||||| || ||||| |||||||| ||||||||||| ||||| ||  | || ||||||||| |  | ||| ||||||| || | || | | ||   | || | ||   ||     || | | |||   |  ||   |   | |||| |    ||||  |||||||
AGATACTGTTCTTGCAACTCGCAAGCAGATCGAATCTCGGAATCCACTAGCATTTGCTCCCAAAGTGATTAGGAGCTCTGATTCTTTGCCGGAAGTTGGGgttaggacataattctt--gccttgtgtttatacaga--aaatctgaactgctagttaccc---tgttaagtgaggttttctcttgcag