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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTCTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATgtaagcactgtgtctggtttcatctagaaagttctctccatttctcagcttatttagcttcaaatatgtttatttcag

Basic information

species Glycine max
transcript GLYMA10G36770.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36770.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G43190.3 (Arabidopsis thaliana), 5'ss of exon 13
TGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTCTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATgtaagc--actgtgtctggtttca-tctagaaagttctctccatttctcagcttattt--agctt--caaatatgtttatttcag
  |  |||| ||||||||||||||||| |||||  ||||||| || ||||| || |||||||| ||||||||||| ||||| || || || ||| | ||||||||       | ||  ||||   | | || |  |   |   | |  ||   | ||   | |||  || ||   ||| ||||||
CACATCAGCGATTGCAGCTGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATgtaagttggtcatttcccgttttgcttttgataacttagtttttcttacaatattttccaaacttaccagattcatttgtttcag

upper sequence: GLYMA10G36770.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 12
TGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTCTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATgtaagcactgtgtctggtttcatctagaaagttctctccatttctcagcttatttagctt--caaatatgtttatttcag-----------------------------------------------------------
|||  | |||||||| ||||||||||| |||||| |||| |||||||| | ||||||||||||||||||||| || ||||| || ||||| |||||||| ||| |   | | |       | |||      |  ||| | | |      |||||||  ||  | | | | | | ||  |                                                            
TGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTGGAATTAGTGGGACAAATGACAGGTGTACTGTCCTTGTCTCTAATCTAAATCCTGACgtatgacttctctactcacccttcttcttcttcttcttcttcttcttctttatttatttttcctattttatcttttgtattaaaattttctgttggctcttctaccacttatgtttgggaactttttctgtcatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274129|gb|BF324497.1|BF324497
EST:     CTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGAT                         AGAATTGATGAGGATAAACTATTCAACTTGTTCTCTATTTATGGGAACATT
genomic: CTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATgtaagcactg ... tttatttcagAGAATTGATGAGGATAAACTATTCAACTTGTTCTCTATTTATGGGAACATT
EST: gi|18733034|gb|BM527388.1|BM527388
EST:     CTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGAT                         AGAATTGATGAGGATAAACTATTCAACTTGTTCTCTATTTATGGGAACATT
genomic: CTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATgtaagcactg ... tttatttcagAGAATTGATGAGGATAAACTATTCAACTTGTTCTCTATTTATGGGAACATT