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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaacctgttaaggccgggctgctattacttattagtttaaagtttggtcttatattgatgaatgatcaaataacttatctgatcaccagctctaattaaaacaaatagattgaggagaaataattttcttgtcctatttaccag

Basic information

species Glycine max
transcript GLYMA10G34370.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524300|gb|BU083111.1|BU083111
EST:     TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|207732562|gb|GD708085.1|GD708085
EST:     ATGACAAAGAGGGTTTTGTTGGTTTCTCAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: ATGACAAAGAGGG-TTTG-TGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|192333297|gb|FK024274.1|FK024274
EST:     TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|209709967|gb|BW681010.1|BW681010
EST:     CAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: CAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|214005577|gb|DB984585.1|DB984585
EST:     ATTTTGATGACAAAGAGGGTTTGTGGTTACACAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: ATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|31311023|gb|CD396226.1|CD396226
EST:     TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|151406054|gb|EV275869.1|EV275869
EST:     TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: gi|58018836|gb|CX705578.1|CX705578
EST:     TAAATTTTGATGACAATGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT                         GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaacctgttaaggccgggctgctattacttattagtttaaagtttggtcttatattgatgaatgatcaaataacttatctgatcaccagctctaattaaaacaaatagattgaggagaaataattttcttgtcctatttaccag

- - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - -  AAGAGG