Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatttatgctctctacatttcatatatgccatgtttgtatggattacttcatatttcttaaatattcaataatggtattttatatttgttttat...

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g06720.1 (Oryza sativa), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatttatgctctctacatttcatatatgccatgtttgtatggattacttcatatttcttaaatattcaataatggtattttatatttgttttat-
|| ||  |||| || || |  |  || || || || ||||| || || ||| |||| ||||| ||||| || ||||||||||||||||| |||||||  |||| ||   | ||  |    | || |  |   ||  |  ||| |||| |  |  |   |  | |  | |  ||  ||| |       |  ||  ||| |  
AATGTGCAGCCGGTGGAGATGGCTGCTTCTAAGCTGTTTGTGCAGTGTTCTAGGCAAAAGGGTCTTATTAAAATCTACAGGCACTTGCTTAATTATCACAgtattgttctaatcttactgatatatttttgttgatacattt-tatgtagaaggttgcagatttgcagttatctttaaggactaccaactttgttttcaca

upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G02940.1 (Arabidopsis thaliana), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatttatgctctctacatttcatatatgccatgtttgtatggattacttcatatttcttaaatattcaataatggtattttatatttgttttat
||||| ||||| || ||||||    |||||||| | ||||| |||||||| || || ||||  || |||||||||||||||||| | ||||||||   |||||    | |  |  | |  | || |   |  |   | ||||   |        | ||   |   || | |  | |  | | |                 
AAAGTGGAGCCGGTTGAAAATTCTACATCCAAATTGTTTGTCCAATGCTCACGTCAAAAGGACCTGATAAAGATCTACAGGCACCTACTAAATTACTCAAgtaagatactattattatacatatgttg-acttattaagttttgttatcaagactgattagtaccaagtctctactcgttgcag----------------

upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatttatgctctctacatttcatatatgccatgtttgtatggattacttcatatttct--taaatattcaataatggtattttatatttgttttat
||||| ||||| || ||||||||  | |||||| | ||||| |||||||| || || || |  ||||||||||||||||||||| | ||||||||   |||||| |  |   | |    ||| || |   | |    ||| |  |    ||| ||||| ||| |  | || | | | ||||   |  |  || |||||  | 
AAAGTGGAGCCGGTTGAAAATGTTACGTCCAAATTGTTTGTCCAATGCTCACGTCAAAAAGACCTTATAAAGATCTACAGGCACCTACTAAATTACTCAAgtacggtgtgctttcagcttactttac---tgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtc-tacttgttgcag

upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatttatgctctctacatttcatatatgccatgtttgtatggattacttcatatttcttaaatattcaataatggtattttatatttgttttat---
||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||| || || ||||||||||  || || || |||||||||||||||   | ||  ||   || | || ||   |  || ||  |  |    |||   | ||     || |||  || ||  | |   || |        |    
AAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTCGGCAAAAGGGCCTGATCAAGATCTACAAACATTTACTTAATTATCGAAgtactttctataatcttgttaaaatt-atgactttcaagtaagctttttctacaaaagataaa--aagtataaaacaaaagcaaaataaaaaacaaagaagca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154053|gb|BM143986.1|BM143986
EST:     AAGATCTACAGGCACTTGCTAAATTATCGAA                         AAAATGTATTCAATCTTTGCAGCTTGCCTAATCTAGAAGGACTGACATATA
genomic: AAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatt ... tcatttgcagAAAATGTATTCAATCTTTGCAGCTTGCCTAATCTAGAAGGACTGACATATA