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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaaaatcaaagcagtgcaccttttttacttttccatttggccctgcaccccctgctgaatatgctgaataattttcatattctgcttacttatcttctattgactattgagcctggaataagctttattctttgttttccttcag

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 12
GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaaaatcaaagcagtgcaccttttttacttttccattt--ggccctgcaccccctgctgaatatgctgaataattttcatattctgcttacttatcttctattgactattgagcctggaataagctttattctttgttttccttcag---
|||||||||||| |||||||||||||| |||||||| ||||   ||||||| ||||| ||||||||||||||||||  ||  |||||      |   | | | || |  | ||  |||  |    ||   | | | || | | |  |      ||   |  |  |  |||       ||| |  |   |||  | || |||||    |||  ||      | ||  |   
GCATAGTTTAAAAGAGGTTTTGGATGCACCAAATGTGATGAACATGATAAAGGATACAAAAGCAGCACAAGAGgtaggatgcaaatccttcttggttaacatcttcatctgtctctttctgattttgtttctcttcctaactcttgttgtctgttcaaacctgtttgttaagcgagctctgtccatctttgc-cttgaaataacaaatatctttctccccctttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193661647|gb|FK602601.1|FK602601
EST:     AAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: AAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|193488290|gb|FK456113.1|FK456113
EST:     ATGCTCCAAATGTCATGAGTTTGATAAGAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACA
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACA
EST: gi|14011604|gb|BG726526.1|BG726526
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|23731912|gb|BU764103.1|BU764103
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAATGAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAATGAT
EST: gi|10231661|gb|BE800549.1|BE800549
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|22928753|gb|BU545892.1|BU545892
EST:     ATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGANNNNNNNGACATGCTTTCAAAT
genomic: ATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|208081318|gb|GD881650.1|GD881650
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|7690977|gb|AW759112.1|AW759112
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|31471412|gb|CD413440.1|CD413440
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT