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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgattttggaataggctattgtgtttatgtgactttggtctttctttgttttcattaagaaattattggctgactttttgtatgttattggtgcttgtaccag

Basic information

species Glycine max
transcript GLYMA10G28530.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.3 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 12
GATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgt--tgattttggaataggctattgtgtttatgtgactttggtctttctttgttttcattaagaaattattggctgactttttgtatgttattggtgcttgtaccag----
||||||||||| ||| | ||||| || || || |||||  |||   | ||| |||||||||||||||| |||||||||||||| || || ||  | || ||||||   | ||  || || |    ||| | |       | | |       |||  ||| |  |   || || ||     |||  |||| | ||  || ||||| |  ||     
GATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTCACGgtatgcaatcatcctgaaaca----attttatcagcaccagtgt-------cttgttttcccatgcaaagttgtt-----actgattgt-tattgctgctgcttctgtcaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9983502|gb|BE657610.1|BE657610
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|151395928|gb|EV265805.1|EV265805
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTTCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|26047916|gb|CA784556.1|CA784556
EST:     TTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTTCAA-TCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGGTCCAGAGCATG
genomic: TTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTT-CAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|21677182|gb|BQ629533.1|BQ629533
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|213603858|gb|DB982158.1|DB982158
EST:     TATTTAATTTCAAATCCCATG                         AACTGAAAGGCT-CCCCAGCTGAGATTTTGGTGAAATTGGATCCAGAGCAT
genomic: TATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGG-TGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCAT
EST: gi|27426035|gb|CA937555.1|CA937555
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|16342133|gb|BI967728.1|BI967728
EST:     TTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: TTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|9205358|gb|BE331582.1|BE331582
EST:     CTGGC-AAATGGACGATTCCTTCCAACAATATTTAATTTCCAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAAATTTTGGTGAAA
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAA
EST: gi|7029921|gb|AW459704.1|AW459704
EST:     GATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|207786927|gb|GD755386.1|GD755386
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTT
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTT
EST: gi|16104780|gb|BI892520.1|BI892520
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|19453358|gb|BM954768.1|BM954768
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|10710608|gb|BF010326.1|BF010326
EST:     TTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAATATCCCATG                         AACTGAAAGGTGTCCCACCTGAGATTTTGGTGAAATTGGTT
genomic: TTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAA-ATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTT
EST: gi|208146826|gb|GD947195.1|GD947195
EST:     GATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|31307101|gb|CD392304.1|CD392304
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|18039146|gb|BM307440.1|BM307440
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|22929643|gb|BU546782.1|BU546782
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|10253276|gb|BE821042.1|BE821042
EST:     GATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|214005861|gb|DB988702.1|DB988702
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|214004064|gb|DB984970.1|DB984970
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254331482|gb|GR843439.1|GR843439
EST:     TTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: TTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|24206278|gb|BU965531.1|BU965531
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|208058584|gb|GD857720.1|GD857720
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|193643115|gb|FK589431.1|FK589431
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|23729240|gb|BU762707.1|BU762707
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254344096|gb|GR851006.1|GR851006
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG