Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttggaataggctattgtgtttatgtgactttggtctttctttgttttcattaagaaattattggctgactttttgtatgttattggtgcttgtaccag

Basic information

species Glycine max
transcript GLYMA10G28530.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 12
----CCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgt--tgattttggaataggctattgtgtttatgtgactttggtctttctttgttttcattaagaaattattggctgactttttgtatgttattggtgcttgtaccag----
    ||||||| ||| | ||||| || || || |||||  |||   | ||| |||||||||||||||| |||||||||||||| || || ||  | || ||||||   | ||  || || |    ||| | |       | | |       |||  ||| |  |   || || ||  |||| | ||      ||  || ||||| |  ||     
GATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTCACGgtatgcaatcatcctgaaaca----attttatcagcaccagtgt-------cttgttttcccatgcaaagttgtta-ctgattgtt-----attgctgctgcttctgtcaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729240|gb|BU762707.1|BU762707
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|19453358|gb|BM954768.1|BM954768
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254331482|gb|GR843439.1|GR843439
EST:     TTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: TTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|214005861|gb|DB988702.1|DB988702
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|31307101|gb|CD392304.1|CD392304
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|151395928|gb|EV265805.1|EV265805
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTTCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|21677182|gb|BQ629533.1|BQ629533
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254344096|gb|GR851006.1|GR851006
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|9983502|gb|BE657610.1|BE657610
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|16342133|gb|BI967728.1|BI967728
EST:     TTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: TTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|27426035|gb|CA937555.1|CA937555
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|16104780|gb|BI892520.1|BI892520
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|7029921|gb|AW459704.1|AW459704
EST:     GATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|18039146|gb|BM307440.1|BM307440
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|10253276|gb|BE821042.1|BE821042
EST:     GATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|214004064|gb|DB984970.1|DB984970
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|207786927|gb|GD755386.1|GD755386
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTT
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTT
EST: gi|22929643|gb|BU546782.1|BU546782
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCAT-G---                         AACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|24206278|gb|BU965531.1|BU965531
EST:     CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG--A-                         A-CTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGGTATgttgattttg ... cttgtaccagAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG