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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCTGATGTAAAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcag

Basic information

species Glycine max
transcript GLYMA10G11720.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G033592_T01 (Zea mays), 5'ss of exon 12
ATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCTGATGTAAAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaacactttgttagct-cttgttacta------aattctataa-agaaatacaatattctaa--agaattatgcattctcaatcttactt----gcttcag-------------------------------
| ||||||||| |||| |||||||| ||||| ||| ||||||||||||| || || || ||||||   |||| ||||||||| ||    || || ||||||||  | |   |||   | |  ||   ||| |      ||||| | |  |  | |    |||||| |     | | |  | | | ||| | | |       ||||                                
ACTCTGTTCCAATTGGTAAGATGATAGTTCTCGATTTATTTGCTGATGTCAAGCCCATTTGGAAAGTGTCCTCTCAGTTTTACGGCGTACCATACATCTGgtatgtcatcttttaacaaccgctccctaccatcctgtaattccagaccattatttttgtattctcattgttactttaaaatatgaatataattcctgattttcaaccatatttactgatagatttgctcaatctag

upper sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 12
lower sequence: AT5G13690.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCTGATGTAAAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcag
|||| ||||| ||||| || ||||| |||||||| |||| |||||| || ||||| |||||||| || |||   || |||||||| |||||||||||||||||  ||    | | | || | |  ||  ||      |   ||        |||| | | |  || |  ||| | ||||  |     | |||
ATTCAGTTCCCTTTGGCAAAATGATAGTTCTTGACCTATATGCTGAAGTCAAACCGATATGGAACAAGTCCGCCCAATTTTATGGAACTCCTTATATCTGgta--tattgttgtctcag-tttccttcttatgcctgagtcag-----ttgtatttttacgtgtt-tttattat-aatcggatgaattccag

upper sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 5'ss of exon 12
ATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCTGATGTAAAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattc----taaagaattatgcattctcaatcttacttgcttcag------------------------------------------------------------------------
||||||||||||||||||| ||| | ||||||||||||||||||||||  |||||||| |||| ||  |||| ||| |||||||| ||||| ||||||||||||  | | ||||   ||   | | |||||  |  ||    || ||| | | |||    | ||||   ||    ||| |||||| | |  || |                                                                         
ATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTCCCTATATCTGgtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322077|gb|FK012181.1|FK012181
EST:     AAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTG                         GTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGA
genomic: AAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaaca ... cttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGA