1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
CAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccagttctttactggtccaaaatatgcctctattcctgaagaagtatatctaacacccttctctgctttgtgcatag
species | Glycine max |
transcript | GLYMA10G02400.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193309119|gb|FK273939.1|FK273939
genomic: GATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193393876|gb|FK358483.1|FK358483
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|18848608|gb|BM567759.1|BM567759
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: GTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193395088|gb|FK358589.1|FK358589
genomic: GTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193387888|gb|FK354733.1|FK354733
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: TCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193393660|gb|FK360674.1|FK360674
genomic: TCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193316342|gb|FK281498.1|FK281498
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193407493|gb|FK371497.1|FK371497
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATEST: gi|193388067|gb|FK354268.1|FK354268
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: CGGACAAAGTTGCAATCAGTGATATCTTTGAG GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccagttctttactggtccaaaatatgcctctattcctgaagaagtatatctaacacccttctctgctttgtgcatag
- - - - - - - - - - - - - - TGGAGG