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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacctcattttattaaaatactttaatgttatgacttatggaatactgattggcaaacagtttctatgacttgtaataaaatcacaatttgaattttatggtgactggaaatttctgaattggtgtcatgattcatttatttcag

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 12
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacctcattttattaaaatactttaatgttatgacttatggaatactgattggcaaacagtttctatgacttgtaataaaatcacaatttgaattttatggtgactggaaatttctgaattggtgtcatgattcatttatttcag
|| || ||||||||||||||||||||||| ||||| ||||| ||||| |||||     | |||       | |     |   ||||| | |    | | || |  ||||||  |  |||   |  || ||    |||||  || |      | |  | ||| |                                              
GGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGgtg----tgaatgtgtgataatacccaattttacttgact----taatttgtccaatactcttatgcacttatattgtactgtttgtacaaacagt----tctctactttgt----------------------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 12
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacctcattttattaaaatactttaatgt---tatgacttatggaatactgattggcaaacagtttctatgacttgtaataaaatcacaatttgaattttatggtgactggaaatttctgaattggtgtcatgattcatttatttcag
||||| ||||| || ||||||||||||||| |||||||||| ||||| |||||| | |       |  | || ||   | || | | |||| |   |||  ||| ||    |||   |    | |  ||  | |   || |  | ||      || || |                                                    
GGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaa-------atttaatgtttgaagaaaattctaatctccatattccttgtgagg-actacatattcatctatta-tgttgtttatggttaag--gtgatctgcacc--------------------------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacctcattttattaaaatactttaatgttatgacttatggaatactgattggcaaacagtttctatgacttgtaataaaatcacaatttgaattttatggtgactggaaatttctgaattggtgtcatgattcatttatttcag
|||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||     ||  |  |   |  || |||  | |    ||||     |  ||     ||  | |||    |  ||| || |||||     |    |  |||    |||   || |                                            
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatg----aatctagatgctaa-ggttgtattattgttcct-tgact---gtttgggttgcaacc--aataacattgcag-----------------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 13
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacctcattttattaaaatactttaatgttatgacttatggaatactgattggcaaacagtttctatgacttgtaataaaatcacaatttgaattttatggtgactggaaatttctgaattggtgtcatgattcatttatttcag
|| |||||||||||||| |||||||||||| | |||||||| ||||| |||||| |  |    ||  |  ||| |  | || ||   | || | || |   |  ||| | | ||  ||||  | ||   | ||  |||   || |   ||||                                                         
GGAAAGGTTAACCCTACTCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAGgtaaagtttgtgtcttca-attctggttaattaagatgatatgatcaacca--gaaaattcatcagcaagtaattatcaaga--tgtttgaagactgcaataatg-----------------------------------------------------