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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgacaaatattgcatttgtgtatccttttatttaattgcttgtgtgatgctgatgttgccggtgttctgacacag

Basic information

species Glycine max
transcript GLYMA10G01280.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 5'ss of exon 12
GAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaac-taattct--ctgacaaatat--tgcatttgtgtatccttttatttaattgcttgtgtgatg-----ctgatgttgccggtgttctgacacag
|| || ||| | ||||| ||||| |||||||| ||||||||||| |||||| |||| || || |||| |||||| || ||||| |||||||   || ||||||||     ||  |   |||||| ||    ||| |    | |   || |     |  | |    | ||      ||  |  |   |  | | ||| ||||
GAAGCATTGATCCATCCCTTCTTCGATGAACTCCGTGATCCAAACACCCGCTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgcaacaccggctgacatatgacatgcgtagacgaaaatttctgaaccaccgatcaacttataattatctactaatctggccgatttga-acag

upper sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 12
GAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgacaaatattgcatttgtgtatccttttatttaattgcttgtgtgatgctgatgttgccggtgttctgacacag
||||  ||  ||||||||||||| |||||||| || ||||||||| | ||| |||||||||| |||   ||||||||||| || || ||||   |   |||||||   |||   | |    |||     |       |  |       | |  ||   | |  || |    |  |   ||  ||   ||||
GAGGTGTTAATTCATCCATTCTTCGATGAACTACGAGATCCAAATGCTCGCTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaag--ttaagatttttgtcaatgccagaccaactgaaacaccc---tgacagca-atatcctgatttgctaactactgaacttgaacag

upper sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G075992_T01 (Zea mays), 5'ss of exon 7
GAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgacaaatattgcatttgtgtatccttttatttaattgcttgt----gtgatgctgatgttgccggtgttctgacacag-------
||||| ||  | |||||||||||||||||||||||  | |||||  | || ||||||||||| |||| ||||||||  ||||| || || | | | |||||||||   | || || |  | |   |||||   |   |  |||| |  || |   | ||    | |  | |   | ||  |  | || | |  ||       
GAGGCGTTAATCCATCCATTCTTTGATGAACTGCGGTACCCAAACTCACGTCTACCAAATGGCCGTTCCCTTCCCCATCTCTTCAATTTTAAACCTAATGgtaag--ttcatgctatttcgacatttgcacgggctgaaactttaaggtagtgtttggttccggagtcggttgggatggagcagctccgtccgagagatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208207665|gb|GE007586.1|GE007586
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAAGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|193510907|gb|FK471325.1|FK471325
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAATTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|151393723|gb|EV263598.1|EV263598
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|9983961|gb|BE658069.1|BE658069
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|14991512|gb|BI317185.1|BI317185
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|209698373|gb|BW667613.1|BW667613
EST:     TCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: TCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|5175344|gb|AI759677.1|AI759677
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
EST: gi|19944926|gb|AB082946.1|AB082946
EST:     CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATG                         AGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG
genomic: CCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaacta ... tctgacacagAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATG