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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGgtacttttggaggagaataatttgacttaagataatgtaaattagactatgtttgcttaaaacgtatgtgcatgttgtttagcttattttagagaaataa...

Basic information

species Glycine max
transcript GLYMA09G41510.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 12
TGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGgta--cttttggaggagaataatttgactt-----aagataatgtaaattagactatgtttgcttaaaacgtatgtgcatgttgt-ttagcttattttagagaaataa
||||||||| |||||||| || |||||  | |||||||||||    || ||| | |||||||| || |||||||||||||| |||||||||||||||||||||    | ||  |    || |  |   ||     | ||  |||    || | | |||  |  ||      | | | ||  ||||  ||| |  || |   |      
TGGAATATTCCCATATGTGCTGAAGCTTCTGCAAACAACAACGAATGAGCTAAGACAGATCCTGGTTTTCATATGGACAAAAATTCTTGCACTTGACAAGgtaaatatctgatgttccatgagctattttttgggaggaagatggtggtttg-ccatgcctctttttgttat-tctacaaattgtgctagttctttctgtgg------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 12
TGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGgtacttttggaggagaataatttgacttaaga------taatgtaaattagactatgtttgcttaaaacgtat-gtgcatgttgtttagcttattttagagaaataa
|||||||| ||| |  ||  | |||||| | |||||||||||    || ||||| ||||| ||||| ||||||||||||||||| || |||||||| ||||||| |   |    | ||   |   |||          |  | ||  |  |    |   |  |    | | ||  |  | ||   |  | ||  || |         
TGGAATATATCCTTGCGTAGTGAAGCTGCTGCAAACAACAACTATTGAGCTACGGCAGATTCTTGTTTTCATATGGACAAAGATCCTAGCACTTGATAAGgtacatgcagtttcgtatgtctctgcttgttcgtttcttgttatacctctgctacttccttttggggatgcattattaacgtgactctgttttcttcatg-------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 12
TGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGgtacttttggaggagaataatttgacttaagataatgtaaattagactatgtttgcttaaaacgtatgtgcatgttgtttagcttattttagagaaataa--
||||||||||||||||||||| |||||||| ||||||||||| || ||| || | || || |||||||| |||||||||||||| ||||||||||| ||||||   || || |      |||    ||   | ||| |  ||| || ||| |  |  | | |    ||    | ||      | |  |  | |         
TGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTGCACTTGATAAGgtatacttagaagtcctccattatttttttcacaatat--atttgagtatttgaggatgacaaagttgctactattagaagacatgctccatatgttcttga

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
TGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGgtact--tttggaggagaataatttgact-taagataatgtaaattaga-ctatgttt----gcttaaaacgtatgtgca-tgttgtttagcttattttagagaaataa
 |||||||| || ||||| || |||||| | ||| ||||  |  | ||  | || || || |||||||| ||||||||||||||||| || |||||||||||  |  | |      | ||| |||  || | |  |  |  | | |||  |||| | |    |||      |  | || | || ||||||||||     |         
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208153187|gb|GD949200.1|GD949200
EST:     AAAGATTCTTGCACTTGACAAG                         TCATGTCAGGTTGATCTAGTGAAGGATGGCGGTCATATCTATTTTATTAAG
genomic: AAAGATTCTTGCACTTGACAAGgtacttttgg ... tgggttatagTCATGTCAGGTTGATCTAGTGAAGGATGGCGGTCATATCTATTTTATTAAG