Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacataattaggatcattctgttatttcttatgaaaaaatagtttatgtactaacaatattaatagtttttacactgtcatccaataaaaaattat...

Basic information

species Glycine max
transcript GLYMA09G40990.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193529223|gb|FK484414.1|FK484414
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAGGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|208312867|gb|GE111699.1|GE111699
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGT
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGT
EST: gi|193707287|gb|FK644101.1|FK644101
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAGGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|193362616|gb|FK327036.1|FK327036
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|193310893|gb|FK277617.1|FK277617
EST:     AAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGT-AAAAGGTTAGGATGGAAGGTGATGAAGAG
genomic: AAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|207816115|gb|GD789182.1|GD789182
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGT-AAAAGGTTAGGATGGAAGGTGGTGAAGGGG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAA-GAG
EST: gi|193707345|gb|FK644159.1|FK644159
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAGGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|31458286|gb|CD400314.1|CD400314
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|213600126|gb|DB976043.1|DB976043
EST:     AGATAGTAGCTAACAAGGAAGTTGGTGCAGTTAACCAAG                         ATCCACTTGGCT-AACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGG-TGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|208328230|gb|GE130060.1|GE130060
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: gi|193303351|gb|FK272573.1|FK272573
EST:     AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG                         ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGA
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacataattaggatcattctgttatttcttatgaaaaaatagtttatgtactaacaatattaatagtttttacactgtcatccaataaaaaattat

- - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaaa