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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCATGTGCACACCCTTTCTTTGATGATCTGCGAGAACCAAATGCATGCTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggtgacaagcttaccattatctgttaaattaaatcatttaccattacttaatttgaaaaaacaatgcag

Basic information

species Glycine max
transcript GLYMA09G40150.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 5'ss of exon 12
GAAGCATGTGCACACCCTTTCTTTGATGATCTGCGAGAACCAAATGCATGCTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggtga--------caagcttaccattatc--tgttaaattaaatcatttaccattacttaa-tttgaaaaaacaatgcag--------------------------------------------------------------------------------------------------------------
||||| ||||||||||| |||||||||||  | || || |||||||  |   ||||||||||  || || ||||||||||||| ||||||||||| |||||| |||   |            | |||| | | |||  |   |||       | ||| |||||    | ||||   | |     ||                                                                                                               
GAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCAAATGTTTCACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAGgtcagtacatatattatcttttaccttagcttcatccttacaaaaactgtgaagttatcattagccgactttgtttagatttcacaatcatatgtgaagagtagaaattgcagcagaatacaagaaatgttttgacggattgggtctacatttggttctgtcacattgatttgttgccattgtatgtgactattcag

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G61160.2 (Arabidopsis thaliana), 5'ss of exon 12
GAAGCATGTGCACACCCTTTCTTTGATGATCTGCGAGAACCAAATGCATGCTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggtgacaagcttaccattatctgttaaattaaatc---atttaccattacttaatttgaaaaaacaatgcag
||||||||||||||||| ||||| ||||||||| |||| || |  |||| |||||| |||||  || || | |||||||||||  | ||||| |||||||||   ||||  || |   |    || | |  ||| |||  ||   |      | | ||||  ||          |||||
GAAGCATGTGCACACCCATTCTTCGATGATCTGAGAGACCCGAGAGCATCCTTGCCTAATGGAAGAGCACTTCCTCCATTGTTTGATTTCACAGCTCAAGgt--tttggcaactacactttgcttcttttataacttacctcccaaccggaaaatgcttatctttctc--ttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734580|gb|BM528264.1|BM528264
EST:     CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAG                         AACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggt ... aacaatgcagAACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
EST: gi|16280433|gb|BI943960.1|BI943960
EST:     CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAG                         AACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggt ... aacaatgcagAACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
EST: gi|15337648|gb|BI498304.1|BI498304
EST:     CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAG                         AACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggt ... aacaatgcagAACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
EST: gi|209727344|gb|BW655275.1|BW655275
EST:     CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAG                         AACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGGCGACCATTGCCTCCATTGTTCAACTTCACTGCTCAAGgtaagttggt ... aacaatgcagAACTGGCGGATGCACCCGATGAGTTGCGTAGGCGTCTCATTCCTGAGCATG