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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatgtctgttatatattgatataaatgggttttgcttttgccttggtttctttttaaaatataaaagtgttactggtgttaatggaatgttagatacat...

Basic information

species Glycine max
transcript GLYMA09G38740.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 12
GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatg--tctgttatatattgatataaatgggttttgc-ttttgccttggtttctttttaaaatataaaagtgttactggtgttaatggaatgttagatacat
|||| ||| |||||||| ||||||||||| ||||| |||||||||||  | ||||||||  | ||||||||| |  |  |||| || || ||| |   ||   |    |    || |      |||||     |       | ||| |  |  | |   | | |||||| |  |  ||   |   || |    
GTTTTCCCCCATGTTGCCACTGGGTTCTCTGATACTTCTGCTTTTCTTCGTGAACTGACCTTGAAGTCTATGCTTGTATTGGCACCCAAAgtaagaccctcccaaccctctgcatgatcaacatttgcaccccgaacaaaatccttgtggatgtctttcatttttactgattgtgctgtgttaacagttt---

upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 12
GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtat--gtctgttatatattgatataa----atgggttttgcttttg-------ccttggtttctttttaaaatataaaagtgtta-ctggtgttaatggaatgttagatacat---------------------------------------------------------------------
|| |||||||||||||||||||| ||  | |||||||||||||||||| | || ||||||||||| || ||| |  || | ||||| |||||||  ||   | |   ||| |         ||  ||||| | || |       |  ||  |  ||  |   || | ||    ||| || || || || |    | | ||  ||                                                                     
GTATACCCTCATGTTGCTACTGGATTTGCGGATACATCTGCTTTTCTCCGAGAGCTGACTCTTAAATCGATGCTCGTTTTAGCTCCGAAGgtatctgttcttaacccattcaagccgctttatatgttttccgttagaaaaggtcactgtctgtttcatcccatctgaagactttagctcgtctttattgtcgttcacatttatatttgtcataatctagttgtatctgatataaattgtttttctcttttcttttgttgtctttggctgcag

upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 12
GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatgtctgttatatattgatataaatg----ggttttgcttttgcct--tggtttctttttaaaat-ataaaagtgt-tactggtgttaatggaatgttagatacat
|||||  |||||||||||||||||||||| || || |||||||||||  ||||| |||| ||||| || ||| | ||||| ||||| ||||||| | | |   |  || || |   |     ||   |    | || |  |||| | |  | | ||| || ||| | | |  | |||| |   ||||  |        
GTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGGGAATTGACACTTAAATCCATGCTTATTCTTGCTCCTAAGgtatttgtatctcaatttcatttttctttggtggcaatatcatagcttcatggtgtttggtaataatgatgaaactttctgttagtgtgatgagaattct--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021829|gb|BM092863.1|BM092863
EST:     CTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG                         TTGTCTCAAAGGACAATGTCAGGGTCATTATTGAAGTATCTGTCAAAGTTG
genomic: CTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatgtctgt ... ataattgcagTTGTCTCAAAGGACAATGTCAGGGTCATTATTGAAGTATCTGTCAAAGTTG
EST: gi|254342248|gb|GR853385.1|GR853385
EST:     CTTTTCTCAGG-AACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG                         TTGTCTCAA-GGACA-TGTCAGG
genomic: CTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatgtctgt ... ataattgcagTTGTCTCAAAGGACAATGTCAGG