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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACAGAGACTCAGACCGCACCCGCTCCTATGACTCAAGAAGTCGTCGGAGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaattccttgactatccttgaatatttccttttttttttcttttttcaacaacatgcttgtgtagttaacaatggaaaaaacttcaggggatcca...

Basic information

species Glycine max
transcript GLYMA09G38430.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234173|gb|AW569513.1|AW569513
EST:     AGGTCACGCTCTAGATCCCAAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: gi|214009640|gb|DB987924.1|DB987924
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: gi|151403376|gb|EV273186.1|EV273186
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: gi|21601672|gb|BQ612003.1|BQ612003
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: gi|41146117|gb|CK606328.1|CK606328
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: gi|254336539|gb|GR842718.1|GR842718
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: gi|193542476|gb|FK499668.1|FK499668
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATA
EST: gi|16343424|gb|BI969019.1|BI969019
EST:     AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG                         GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACAGAGACTCAGACCGCACCCGCTCCTATGACTCAAGAAGTCGTCGGAGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaattccttgactatccttgaatatttccttttttttttcttttttcaacaacatgcttgtgtagttaacaatggaaaaaacttcaggggatcca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaaa