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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaatcttgttagtttgatgtcaaaatgccatcaactgataaaattgtgactttttggttcggtgagtggtccctaccactggattccatccaacaatcactaaaactctgcaactttttttcctggctaaagcagcattacccttgttagttcaaaaagtaaatatttgaggtttgcttatgcag

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 12
ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaatcttgttagtttgatgtcaaaatgccatcaactgataaaattgtgactttttggttc-ggtgagtggtccctaccactggattccatccaacaatcactaaaactctgcaactttttttcctggctaaagcagcattacccttgttagttcaaaaagtaaatatttgaggtttgcttatgcag
||||| ||||||||||||||||| |||||| |||||||||| |||||||| || |||| | || || | ||| | | || | | || | | | |||| | || || | || || | | ||| || |
ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgt------aaccttgcttattgcat------aagccctaagctcggagattttttaaatggaagttctgacaaggggcttacatca-tgtaaaatgtt-ggtaattcctgcag--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253833|gb|BE821599.1|BE821599
EST:     ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|27426282|gb|CA937802.1|CA937802
EST:     ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|27426098|gb|CA937618.1|CA937618
EST:     ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|20812032|gb|BQ296510.1|BQ296510
EST:     ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|16277795|gb|BI942566.1|BI942566
EST:     ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|21255992|gb|BQ452880.1|BQ452880
EST:     CACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: CACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|16283538|gb|BI945603.1|BI945603
EST:     ATATATCCACCAATCAATGTCCTTGCATCATTGTCTCGTATGATGACG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTGCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|193391746|gb|FK354237.1|FK354237
EST:     TATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: TATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|16277730|gb|BI942533.1|BI942533
EST:     ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|9258589|gb|BE346736.1|BE346736
EST:     ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
EST: gi|16284553|gb|BI946150.1|BI946150
EST:     ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG                         AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC
genomic: ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGgtgaggttaa ... gcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAAC