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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatagcaagtagcaacatacttaattttcttttttatatctatatttggttcaaattttggcgttcctatgtgttgatctttcaattgcag

Basic information

species Glycine max
transcript GLYMA09G37720.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G37720.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 12
TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatagcaagtagcaaca--tacttaattttcttttttatatctatatttggttcaaattttggcgttcctatgtgt-tgatctttcaattgcag
||| ||||| ||||| |||||  |  | |||||||||||||| || || ||||||||| | ||||| || ||||||||||||||||||  | || | | |  || |   |   | |  ||  ||||   |||   | ||   ||   |||  |   |   ||| || | |  |||   ||| ||
TGGAGCTGAGATTGGGAGATTTGTTGCCATGCTACGAAATCCTTCTTCCATACTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAGgtagatttatctattgccatccattttctgaagttggttttctcatcaccactt--ctc---tttctgaaatatgatgggtgtaacgttttggttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588079|gb|AW703882.1|AW703882
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|214005584|gb|DB984592.1|DB984592
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|26058746|gb|CA801660.1|CA801660
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|22932923|gb|BU550062.1|BU550062
EST:     CTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: CTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|7685215|gb|AW755863.1|AW755863
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|18040948|gb|BM309242.1|BM309242
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|13481420|gb|BG510763.1|BG510763
EST:     CTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TAGACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: CTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|24136575|gb|BU927085.1|BU927085
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
EST: gi|17020708|gb|BM091742.1|BM091742
EST:     GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAG                         TTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA
genomic: GAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGgtaactatag ... tcaattgcagTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAA