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TTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCCCACTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagctgcattaatatatcatactcataaatattttttcttctctacaaatataaccgctttttgcttttagttcctttaatttttacttctttat...
species | Glycine max |
transcript | GLYMA09G35050.4 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAATGCATGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAACAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTT-ATGAAAGAAGGCCTT-CCATEST: gi|9984674|gb|BE658782.1|BE658782
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|14516395|gb|BI095067.1|BI095067
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: CAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|6200906|gb|AW153006.1|AW153006
genomic: CAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|14516396|gb|BI095068.1|BI095068
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|7589608|gb|AW705379.1|AW705379
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAAGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|15285962|gb|BI469853.1|BI469853
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|14990535|gb|BI316208.1|BI316208
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCCCACTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagctgcattaatatatcatactcataaatattttttcttctctacaaatataaccgctttttgcttttagttcctttaatttttacttctttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA