Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggagagtcattatagtggtttccttctgtggttggttgatcataagtcacatatctaacttctgtgagtttttcttaaag

Basic information

species Glycine max
transcript GLYMA09G34170.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os12g13170.1 (Oryza sativa), 5'ss of exon 11
GATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggagagtcattatagtggtttccttctgtggttggttgatcataagtcacatatctaacttctgtgagtttttcttaaag-------
|||||| | || || |||||||| ||  | || || || |||||||| ||||||||||| || |||||||| ||||||||| | |   ||   | |   | | | ||     | | |  | ||| |  ||      |  || |  ||  ||  |  ||||||        
GATGAACGGGAACTCAAAAGGCAGAGAAGAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgtttgtgcatttcaagctatactg----gatagaattatcttttgtagtgccttcaattgatg-aagcctaacttaaattctgcag

upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os12g13170.3 (Oryza sativa), 5'ss of exon 10
----------------------GATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggagagtcattatagtggtttccttctgtggttggttgatcataagtcacatatctaacttctgtgagtttttcttaaag-------
                      |||||| | || || |||||||| ||  | || || || |||||||| ||||||||||| || |||||||| ||||||||| | |   ||   | |   | | | ||     | | |  | ||| |  ||      |  || |  ||  ||  |  ||||||        
TGTTGACTCTCCCATGATTCAGGATGAACGGGAACTCAAAAGGCAGAGAAGAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgtttgtgcatttcaagctatactg----gatagaattatcttttgtagtgccttcaattgatg-aagcctaacttaaattctgcag

upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G153144_T01 (Zea mays), 5'ss of exon 12
GATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggagagtcattatagtggtttccttctgtggttgg---ttgatcat--aagtcacatatctaacttctgtgagtttttcttaaag-----------------
|||||||| || || || | |||||  |||||||||||||| || ||||| || ||||| ||| || |||||||||||||  ||   |    | ||  |    || |  ||      |   |  ||| |  ||||  ||     |  || |       |||| | |                   
GATGAAAGGGAACTCAAGAAGCAAAAACGGAAGCAGTCTAATAGAGAATCGGCACGCAGATCCCGGCTGCGCAAGCAGgtgttgtgcaacactaatgctaacatcgtcttgcttcctgaactccatcttctaagtttcaagaggattttgttcagtgctttcgtgatcttattcgattattctag

upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 11
GATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggagagtcattatagtggttt--ccttctgtggttg-gttgatcataagtcacatatctaacttctgtgagtttttcttaaag------
||||| |||||| ||||  | || || |||||||| || || |||||||||||||| || ||||||||||| || |||||||   | |    ||         |   ||    |  |   |   ||||    | |   ||| ||    | |   ||| ||||          
GATGAGAGAGAGATTAAGCGACAGAGACGGAAGCAATCCAATAGGGAATCTGCTCGTAGATCCAGGTTGCGTAAACAGgtaacataaacatgtttcttcaagctgatctagcatcatcatgcctatcaagtatgaatgatcaaaagcttttccttttctcttctgtgttcag

upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 11
GATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggagagtcattatagtggtttccttctgtggttggttgatcataagtcacatatctaacttctgtgagtttttcttaaag--
|||||||||||||||||||| || ||  | |||||||| ||| |||| ||||||||| | ||||||||||| ||||||||||        | | | | |   ||  | |||| | |||    |     |  |  |||  |   | | |  |||||| | |     
GATGAAAGAGAGCTTAAAAGACAGAGAAGAAAGCAGTCGAACCGGGAGTCTGCTCGCCGATCCAGGTTGCGTAAGCAGgtaa--------cttcagattttgttaatcctgttgatggcc--ttgcttggaatttattgagtgtttatatgtttttgtgagtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31473646|gb|CD415674.1|CD415674
EST:     GGAAACAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCCAGCAG                         GCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAAT
genomic: GGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggaga ... tttcttaaagGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAAT
EST: gi|20498852|gb|BQ273782.1|BQ273782
EST:     GGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAG                         GCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAAT
genomic: GGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggaga ... tttcttaaagGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAAT
EST: gi|254313915|gb|GR831544.1|GR831544
EST:     GGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAG                         GCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAAT
genomic: GGAAGCAGTCTAACAGGGAATCTGCTCGCAGGTCCAGGTTGCGCAAGCAGgtaatggaga ... tttcttaaagGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAAT