1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCACTGAGTGAGAAGGGCTATGAGCTTGTTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactacaacttttcattcaagcatcctcaaatatactatgttacgaaattataacattcagcgctaattgtttgtttgttattgtcacaaagctgaa...
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGGATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|193351009|gb|FK315773.1|FK315773
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTCTGGTGGAACTGAGAATCATCTACTTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|207828088|gb|GD797979.1|GD797979
genomic: TTCTGGTGGAACTGAGAATCATCTACTTTT-GGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|207781497|gb|GD754020.1|GD754020
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAAAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTEST: gi|208197654|gb|GD998875.1|GD998875
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGT
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|208201733|gb|GE000507.1|GE000507
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGT-CACATTGCAEST: gi|193427342|gb|FK396168.1|FK396168
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: GGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|208337743|gb|GE135181.1|GE135181
genomic: GGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTEST: gi|208324639|gb|GE120634.1|GE120634
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTT
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|207731953|gb|GD705634.1|GD705634
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|208290230|gb|GE084492.1|GE084492
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|22931030|gb|BU548169.1|BU548169
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|16346437|gb|BI972032.1|BI972032
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|208322012|gb|GE125973.1|GE125973
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|193385890|gb|FK351112.1|FK351112
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|208134534|gb|GD930927.1|GD930927
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TACTCTTGGTGAATTCTTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|16348582|gb|BI974177.1|BI974177
genomic: TACTTTTGGTGAA-TC-TGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAEST: gi|208218304|gb|GE020032.1|GE020032
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCA
EST: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG GGTATTGATGGCTCCAGAGTTCA
genomic: TTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactaca ... tctctgtcagGGTATTGATGGCTCCAGAGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTGAGTGAGAAGGGCTATGAGCTTGTTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAGgtaaactacaacttttcattcaagcatcctcaaatatactatgttacgaaattataacattcagcgctaattgtttgtttgttattgtcacaaagctgaa
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG