1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ACTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTGGGTCCTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATGgtaggttgatgatcctacttgaacacattgaaatttattttctatttccccatgttctagaatacaagttaatgttttcttccttttacattttggctttag
species | Glycine max |
transcript | GLYMA09G33340.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATG CTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAAEST: gi|9440383|gb|BE440889.1|BE440889
genomic: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATGgtaggttgat ... ttggctttagCTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAA
EST: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATG CTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAAEST: gi|192309002|gb|FK001778.1|FK001778
genomic: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATGgtaggttgat ... ttggctttagCTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAA
EST: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGGTGAAAGCAATG CTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAAEST: gi|193703073|gb|FK636929.1|FK636929
genomic: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATGgtaggttgat ... ttggctttagCTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAA
EST: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATG CTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAA
genomic: CTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATGgtaggttgat ... ttggctttagCTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTGGGTCCTGTTAAGAAGCAAATTGATACAAGTGAGGTTCAAAAGATGAAAGCAATGgtaggttgatgatcctacttgaacacattgaaatttattttctatttccccatgttctagaatacaagttaatgttttcttccttttacattttggctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA