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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgatgtcacacaaacccttgtttctttggaattattttgcctcactgatattttatctatttgttgtag

Basic information

species Glycine max
transcript GLYMA09G32740.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 10
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgatgtcacacaaacccttgtttctttggaat-tattttgcctcactgatattttatctatttgttgtag
  ||||||| || ||||||||||| ||||| ||||| || || |||||||||||| |||| || |||||||| || || || ||||||||||| |||||||| || |   |   |   |      | | ||  | |  | | | | |  | |    |  |   |||||||||                
ACTGAGAGATATCATGCAATTTGGGAGCAGCAATACCGCTGTTTTCTTTAAAATGAGAGTCGCTGGTGTTCTTCATATCTTTCAGTTTGAAACTAAGCAGgt-tagt-tttaaatctctaccaggaaataattcatactatgtgtaggctgtgaaataaccatctgatatttag--------------

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 10
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacc-tttgttgatgatgtcacacaa-acccttgtttctttggaattattttgcctcactgatattttatctatttgttgtag
  | |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||| || || || || |||||||| ||||||||||  ||    ||   |   ||     | || ||    | | || |   || ||          |   ||       | || ||    
ACTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTCTTCTTTAAAATGCGGGTTGCTGGTGTTCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagcttcgaggcaatagtttataatacagccgatcctgttatatcatccatagctgttagaataacgatgactttttag--

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 10
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacc-tttgttgatgatgtcacacaa-acccttgtttctttggaattattttgcctcactgatattttatctatttgttgtag
 || |||||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||| || || || || || |||||||| ||||||||||  ||   |||   |   ||    || ||  |   || | || |   || || |    | |||||||   || | || | || |||
ATTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTTTTCTTTAAAATGCGAGTTGCTGGTGTCCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagtttcgaggcaatagttcataatgcatctgatcctgttatatcatcta---taactgatagaataaccatgttttttag

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataa-tacctttgttgatga--tgtcacacaaacccttgtttctttg-gaattattttgcctcactgatattttatctatttgttgtag
  |  | ||||| ||||||||||| |||||||| ||||| ||||| || |||||| |||| || |||||||| |||||||| ||||| || || || ||||| |||  | |  | ||  ||     | | |  |        ||| ||  ||  ||||     |    | ||  || | | ||||| |   
ACTACGTGACATCATGCAATTTGGCAGCAGTAACACTGCTGTCTTTTTCAAAATGAGAGTCGCTGGTGTTCTTCACATATTTCAGTTCGAGACAAAACAGgtttaaacatcactatttgtggatcattatattatgaagcaattccttatgagatattcaattt---gggtaacttgtatgtttgtag---

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 11
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgatgtcacacaaacccttgtttctttggaattattttgcctcactgatattttatctatttgttgtag-------------------------------------------------
  | ||||| |||||||||||||| ||||| |||||||| || || ||||| ||| ||||||||||||| ||||||||||||||||||||||| || |||||     | ||||   | |  | | |   | |    |     |||   | | ||| | |||  |  | |||||| ||||  ||||                                                   
ACTAAGAGATATAATGCAATTTGGTAGCAGCAATACTGCTGTATTTTTTAAGATGAGAGTTGCAGGTGTCCTCCACATATTCCAGTTTGAAACTAAACAGgttcttaatcttttgagtttctat-atgtatatatataacatttttagagt-tttagtctcttttttcttttatgtattccttgtttgcctatcaaaaaattattatttgatagagttctattccattttatgcag

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 11
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgatgtcacacaaacccttgtttctttggaattattttgcctcactgatattttatctatttgttgtag
| |||||||||| |||||||||||||| || ||||| ||||| || ||||||||||| || || || ||| | ||||| || ||||||||||| || ||||| |     |||||| | |  |  |    |   |     |||| |  | || | | ||                             
GCTGAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgt-----ctttgtggct--ttccgtgtagttc-----ttctctaaatttctgtcgcag---------------------------

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 11
GTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgatgtcacacaaacccttgtttctttggaattattttgcctcactgatattttatctatttgttgtag
| | |||||||| |||||||||||||| || ||||| ||||| || ||||||||||| || || || ||| | ||||| || ||||||||||| || ||||| |      ||||| | |  |  |    |   |     |||| |  | || | | ||                             
GCTTAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgt-----ttttgtggct--ttccgtgtagttc-----ttctctaaatttctgtcgcag---------------------------