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TTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGGCTCAAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatagtttgttagtacttattgtatacagtctttttctctgaagtcatatcacgtttaacactgttcttgaaaataatag
species | Glycine max |
transcript | GLYMA09G28650.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGGCTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|192309233|gb|FG999124.1|FG999124
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|58017480|gb|CX704222.1|CX704222
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|209714673|gb|BW674236.1|BW674236
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|193639863|gb|FK592320.1|FK592320
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|22927071|gb|BU544210.1|BU544210
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|192309232|gb|FG999123.1|FG999123
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|26048688|gb|CA785141.1|CA785141
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|193619682|gb|FK572642.1|FK572642
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|193521393|gb|FK481638.1|FK481638
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGGGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGEST: gi|193588325|gb|FK544060.1|FK544060
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAG
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|209714674|gb|BW674237.1|BW674237
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|193529449|gb|FK487832.1|FK487832
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGGCTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|208325439|gb|GE124105.1|GE124105
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAAATAACTAGGAEST: gi|15199729|gb|BI423980.1|BI423980
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAA-TA-CT-GG-
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|207786727|gb|GD757958.1|GD757958
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|208095316|gb|GD892046.1|GD892046
genomic: AAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: TTGTGGAGTAAATGTTCTATTCCGGTACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGTEST: gi|208209540|gb|GE001809.1|GE001809
genomic: TTGTGGAGTAAATG-TC-A-TCCGG-ACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
EST: AAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAA CATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
genomic: AAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatag ... aaaataatagCATGCAAATGGAGAAAATGCATGGATTGGTATAGATGGAAATACTGGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGGCTCAAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAGGAAAAgtaagaatagtttgttagtacttattgtatacagtctttttctctgaagtcatatcacgtttaacactgttcttgaaaataatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA