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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTTCATACAAAGgtaaatgctttggttgtattacaatatttgctccaattgatttctaccaaggcttgtatattttacagacaaaaggatcacagaatggaattgtctgatgtctcttcttgtag

Basic information

species Glycine max
transcript GLYMA09G03680.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03680.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 25
GTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTTCATACAAAGgtaaatgctttggttgtattacaatatttgctccaattgatttctaccaaggcttgtatattttacagacaaaaggatcacagaatggaattgtctgatgtctcttcttgtag
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GTTTGTGACCGGGTGCTCTCGAGGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaa-----ttggtccttcaaattcgtttgctatgttttttttctag-atttcctttttccttttcaact-------ttatgaaat----ttgttgtttgactgttcatatag