1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAATTAACATGGAATGGACAAAACACAGTGTCAGTGAATGAGTTAAATCGGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatcaattaagatcttcaatgcctcttttgcaaaagtgttgtaattttttcaacttttcatgagaaatttcttagttgtatctaatttttaactg...
species | Glycine max |
transcript | GLYMA09G01270.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCGAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193676085|gb|FK620071.1|FK620071
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193422949|gb|FK388070.1|FK388070
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|19268967|gb|BM885223.1|BM885223
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|208160460|gb|GD964650.1|GD964650
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193575951|gb|FK532096.1|FK532096
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|208268587|gb|GE072074.1|GE072074
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193387075|gb|FK352478.1|FK352478
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193375472|gb|FK341655.1|FK341655
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|15813259|gb|BI785534.1|BI785534
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193487219|gb|FK450912.1|FK450912
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193436682|gb|FK400869.1|FK400869
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|193341566|gb|FK308878.1|FK308878
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCEST: gi|208050468|gb|GD845551.1|GD845551
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTAACATGGAATGGACAAAACACAGTGTCAGTGAATGAGTTAAATCGGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatcaattaagatcttcaatgcctcttttgcaaaagtgttgtaattttttcaacttttcatgagaaatttcttagttgtatctaatttttaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA