1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATGTGGCTTGCCTACTAATTTTGATGCTACTTATTGCTATGCTCTGGGTTATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCAgtttgtgcttctctacatgccttaatcttttgatatctacttaaatatctcctagattggtattgataattgattgtactttgaaattgtgtttgttttgtaatattgaagtcaccaacctagttctttaatttgctttgacattttgatcag
species | Glycine max |
transcript | GLYMA09G01050.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCA GTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCAEST: gi|4313720|gb|AI460839.1|AI460839
genomic: ATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCAgtttgtgctt ... ttttgatcagGTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCA
EST: ATGGTGCTGGAGCCCTNCTTCATAGTTGGAAGACTGGACTAATATCATCA GTTGGGGAATT-ATGTGCTCCAGTAEST: gi|7284788|gb|AW597213.1|AW597213
genomic: ATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCAgtttgtgctt ... ttttgatcagGTTGGG-AATTTATGTGCTCCAGTA
EST: ATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCA GTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCAEST: gi|4313349|gb|AI460468.1|AI460468
genomic: ATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCAgtttgtgctt ... ttttgatcagGTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCA
EST: ATGG-GCTGGAGCCCT-C-TCATAGTGGGAAGACTGGACTAATATCATCA GTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCA
genomic: ATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCAgtttgtgctt ... ttttgatcagGTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGCTTGCCTACTAATTTTGATGCTACTTATTGCTATGCTCTGGGTTATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGACTAATATCATCAgtttgtgcttctctacatgccttaatcttttgatatctacttaaatatctcctagattggtattgataattgattgtactttgaaattgtgtttgttttgtaatattgaagtcaccaacctagttctttaatttgctttgacattttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA