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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGACATCTTGCAAACTATTCAACGCTGTACTGCTGTTGATCGCTCCCCTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGgtaaatttcaaatgatgaacctgacacgaatcacagttttttttttatgttattgactgctatgatctttggagttgttgctaaatattatttggagtcatacctaagtcttgtttttttttttctcgttcag

Basic information

species Glycine max
transcript GLYMA09G00470.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 12
CTTGGACATCTTGCAAACTATTCAACGCTGTACTGCTGTTGATCGCTCCCCTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGgtaaatttcaaatgatgaacctgacacgaatcacagttttttttttatgttattgactgctatgatctttggagttgttgctaaatattatttggagtcatacctaagtcttgtttttttttttctcgttcag
    || ||  ||||||| |||||||||||||||||||||||||| ||  | || |||||||||||||| || |   | |||||  | ||| |||||||||||  |   |   | | |   |  ||  |||   || | |||    || ||| |      |||  |   | | |   |  | |    || |||  ||                                    
TACTGAAATTCTGCAAACAATTCAACGCTGTACTGCTGTTGATCGTTCTGCACCGACCCTTATGTGTACTCTTGCAATCGCAAACGCAATTCTCAAGCAGgtaggtaaaagtagtttactttctcaataatattagatgtttgaaaatcttaattttcaatatttttcatagtgccttctccatcatttctttctag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057585|gb|CA800499.1|CA800499
EST:     CTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAG                         TATGGAGTAGAATTTGTAGCTGAGCATCTTCTTCCATTGCTTATGCCCCTG
genomic: CTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGgtaaatttca ... tctcgttcagTATGGAGTAGAATTTGTAGCTGAGCATCTTCTTCCATTGCTTATGCCCCTG