1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGACTTTGAAGGAAAAGGTGAAAGCGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttcattccatcatggttttatggtatgtttccttttgggggatcaattgccaattcagttaagctttttgctgttgatgtgattagagtggggttgtgggggctaaaaatgtatattttggggggcttgtgttaatatactattctttttggcatgcag
species | Glycine max |
transcript | GLYMA08G46090.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|9259263|gb|BE347471.1|BE347471
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|209724188|gb|BW659722.1|BW659722
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|207711696|gb|GD694172.1|GD694172
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|208330473|gb|GE131298.1|GE131298
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|9984306|gb|BE658414.1|BE658414
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: GACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|193446064|gb|FK412245.1|FK412245
genomic: GACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|208056396|gb|GD853375.1|GD853375
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TATGGAAATATGTATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|208051348|gb|GD847187.1|GD847187
genomic: TATGGAAATATG-ATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|15813682|gb|BI785957.1|BI785957
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|207781911|gb|GD750962.1|GD750962
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: ATGGAAATATGATCAACAAGATGAC-AAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|14195902|gb|BE819899.2|BE819899
genomic: ATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|58019857|gb|CX706599.1|CX706599
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|213610535|gb|DB978562.1|DB978562
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|193333493|gb|FK300447.1|FK300447
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|207806520|gb|GD777023.1|GD777023
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAAEST: gi|208328160|gb|GE129598.1|GE129598
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACTTTGAAGGAAAAGGTGAAAGCGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtgttcattccatcatggttttatggtatgtttccttttgggggatcaattgccaattcagttaagctttttgctgttgatgtgattagagtggggttgtgggggctaaaaatgtatattttggggggcttgtgttaatatactattctttttggcatgcag
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